Submitting Campus
Daytona Beach
Department
Mathematics
Document Type
Dissertation
Publication/Presentation Date
8-2003
Abstract/Description
The process of phototransduction, whereby light is converted into an electrical response in retinal rod and cone photoreceptors, involves, as a crucial step, the diffusion of cytoplasmic signaling molecules, termed second messengers. A barrier to mathematical and computational modeling is the complex geometry of the rod outer segment which contains about 1000 thin discs. Most current investigations on the subject assume a well-stirred bulk aqueous environment thereby avoiding such geometrical complexity. We present theoretical and computational spatio-temporal models for phototransduction in vertebrate rod photoreceptors, which are pointwise in nature and thus take into account the complex geometry of the rod outer segment. We consider both the full model and two forms (strong and weak) of a homogenized limit model which involves simplified geometry. These, spatially resolved, models reduce to simpler (longitudinal and lumped) models proposed by physiologists. We establish well-possedness of the model problems using upper and lower solutions and their associated monotone iterations. Computational models of the mathematical problems have been developed, based on Finite Volume discretization of the partial differential equations and boundary conditions, and implemented in Fortran. Convergence of the finite difference system to the solution of the continuous problem for a similar problem is shown in [41]. Due to the intricate geometry of the cytosol, the full model involves very intensive computations. This is achieved via parallelization for distributed memory clusters of processors. The homogenized limit problem is also tested and the computational model based on its weak form is found to produce qualitatively similar results as from the full model. We also tested a spatialy adaptive mesh for the homogenized problem and numerical experiments convinced us that we could get the same qualitative solutions with much less computational effort. Numerical experiments are presented, simulating the single photon response for salamander, with certain activation parameters chosen to produce the experimental 0:8% peak suppression of dark current, kindly communicated by Fred Rieke [45]. The model exhibits highly localized response about the activation site, with longitudinal spread of about 172 discs out of 800 discs. The radial profiles of cGMP become progressively steeper during activation and recede back during recovery. Thus radial diffusion is not negligible.
Sponsorship/Conference/Institution
The University of Tennessee, Knoxville
Location
Knoxville, TN
Number of Pages
133
Scholarly Commons Citation
Khanal, H. (2003). Computational Models for Diffusion of Second Messengers in Visual Transduction. , (). Retrieved from https://commons.erau.edu/publication/817
Included in
Medical Biochemistry Commons, Numerical Analysis and Computation Commons, Partial Differential Equations Commons
Additional Information
Dr. Khanal was not affiliated with Embry-Riddle Aeronautical University at the time this dissertation was published.